Publications

Seema Khadirnaikar, Sudhanshu Shukla, S R Mahadeva Prasanna (2023). Machine learning based combination of multi-omics data for subgroup identification in non-small cell lung cancer. Scientific Reports.

Akshay Jagjampi, Seema Khadirnaikar, Prabhat S Malik, Deepali Jain, Naveen M B, Sudhanshu Shukla (2022). DeepMPS: Development and validation of a deep learning model for whole slide image base prognostic prediction of low grade Lung adenocarcinoma patients. bioRxiv.

Seema Khadirnaikar, Sudhanshu Shukla, S R Mahadeva Prasanna (2022). Development of Machine Learning Model for Pan-cancer Subgroup Identification using Multi-omics Data. bioRxiv.

Pranjal Kumar, Seema Khadirnaikar, Nikita Bhandari, Annesha Chatterjee, Sudhanshu Shukla (2022). An epithelial-mesenchymal plasticity signature identifies two novel LncRNAs with the opposite regulation. Frontiers in Cell and Developmental Biology.

Annesha Chatterjee, Seema Khadirnaikar, Sudhanshu Shukla (2022). Development and validation of stemness associated LncRNA based prognostic model for lung adenocarcinoma patients. Cancer Biomarkers.

Seema Khadirnaikar, Annesha Chatterjee, Sudhanshu Shukla (2021). Genetic and epigenetic landscape of leukocyte infiltration identifies an immune prognosticator in lung adenocarcinoma. Cancer Biomarkers.

Seema Khadirnaikar, Annesha Chatterjee, Sudhanshu Shukla (2021). Identification and Characterization of Senescence Phenotype in Lung Adenocarcinoma with High Drug Sensitivity. The American Journal of Pathology.

Sudhanshu Shukla, Seema Khadirnaikar (2020). RNA-sequencing analysis pipeline for prognostic marker identification in cancer. Cancer Cell Signaling: Methods and Protocols.

Seema Khadirnaikar, Annesha Chatterjee, Pranjal Kumar, Sudhanshu Shukla (2020). A greedy algorithm-based stem cell LncRNA signature identifies a novel subgroup of lung adenocarcinoma patients with poor prognosis. Frontiers in oncology.

Pranjal Kumar, Seema Khadirnaikar, Sudhanshu Shukla (2019). PILAR1, a novel prognostic LncRNA, reveals the presence of a unique subtype of lung adenocarcinoma patients with KEAP1 mutations. Gene.

Seema Khadirnaikar, Pranjal Kumar, Sudhanshu Shukla (2019). Development and validation of an immune prognostic signature for ovarian carcinoma. Cancer Reports.

Pranjal Kumar, Seema Khadirnaikar, Sudhanshu Shukla (2019). A novel LncRNA-based prognostic score reveals TP53-dependent subtype of lung adenocarcinoma with poor survival. Journal of Cellular Physiology.

Shiva Nagendra S M, Pavan Reddy Yasa, M V Narayana, Seema Khadirnaikar, Pooja Rani (2019). Mobile monitoring of air pollution using low cost sensors to visualize spatio-temporal variation of pollutants at urban hotspots. Sustainable Cities and Society.

Seema Khadirnaikar, Pranjal Kumar, Sathiya Pandi Narayanan, Rohit Mallik, Saravana M Dhanasekaran, Sudhanshu Shukla (2018). Immune associated LncRNAs identify novel prognostic subtypes of renal clear cell carcinoma. Molecular carcinogenesis.

Seema Khadirnaikar, Sathiya Pandi Narayanan, Sudhanshu Shukla (2018). Decoding the LncRNA transcriptome of esophageal cancer: identification of clinically relevant LncRNAs. Biomarkers in Medicine.

Seema Khadirnaikar, Aparna P (2017). A feasible QRS detection algorithm for arrhythmia diagnosis. IEEE.